Genetic Data Simulation · Nov 3, 09:20 AM
Brant Faircloth
I have recently been doing some work simulating genetic data. In my search for a pre-existing solutions to genetic data simulation, i have some across the following, which may be of some use to others :
Foward-time simulation programs:
nemo
simuPOP
Reverse-time (Coalescent) programs:
CoaSim
Other:
crittrz
easyPOP
spip
ms2ms
Hopefully, you will find these programs helpful, should you need to generate data for testing. I will also post any additional links submitted.
-------
Databases
NCBI Taxonomy Database
NCBI Taxonomy database search for Order Galliformes holdings (listed by genus and genus-specific epithet)
Specialist Groups
Cracid Group
Grouse Group
Megapode Group
Pheasant Group
PQF Group
Other Labs and Protocols
Bruce Roe's Lab Protocols
Very thorough site from the lab of Bruce Roe
Sheffield Molecular Genetics Facility
The University of Sheffield’s molecular genetics website.
SREL DNA Lab
Travis Glenn’s lab at Savannah River Ecology Lab.
SREL DNA Lab Protocols
Protocols from the Glenn Lab
Tavi's PCR Protocols
Discusses PCR and associated protocols/problems
Suppliers
Applied Biosystems
Equipment, reagents, and primers
Bio-Rad
Equipment, reagents, and consumables
Brinkman-Eppendorf
Equipment, reagents, and consumables
Fisher Scientific
Equipment, reagents, and consumables
IDT DNA
Primers
Marsh Bio-Products
Reagents, consumables
Molecular Probes
Picogreen quantitation reagents
MWG Biotech
Primers, small-scale syntheses
Rainin, Inc.
Pipets and tips
Sigma-Aldrich
Reagents and other chemicals